Publications

Papers:

Ramirez, C.L., Foley, J.E., Wright, D.A., Müller-Lerch, F., Rahman, S.H., Cornu, T.I., Winfrey, R.J., Sander, J.D. , Fu, F., Townsend, J.A., Cathomen, T., Voytas, D.F., Joung, J.K. (2008) Unexpected failure rates for modular assembly of engineered zinc-fngers. Nature Methods, 5:374

Lee, J.H., Hamilton, M., Gleeson, C., Caragea, C., Zaback, P., Sander, J.D. , Li, X., Wu, F., Terribilini, M., Honavar, V., Dobbs, D. (2008) Unexpected similarities in structure and nucleic acid binding sites of diverse telomerase proteins revealed by combining structure prediction. PSB 2008 and machine learning Pac Symp Biocomput PSB08

Sander, JD., Zaback, P., Joung, JK., Voytas, DF., Dobbs, D. (2007) Zinc Finger Targeter(ZiFiT): An engineered zinc finger/target site design tool. Nucleic Acids Research, 35,W599-605

Terribilini, M., Sander, JD., Lee, JH., Zaback, P., Dobbs, D. (2007) RNABindR: A server for predicting RNA-binding sites in proteins. Nucleic Acids Research, 35, W578-584.

Wright, DA., Thibodeau-Beganny, S., Sander, JD., Winfrey, RJ., Hirsh, AS., Eichtinger, M., Fu, F., Porteus, MH., Dobbs, D., Voytas, DF., Joung, JK. (2006). Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly. Nature Protocols, 1, 1637

Talks:

Sander, JD., Terribilini, M., Lee, JH., Jernigan, LR., Honavar, V., Dobbs, D. A Computational Method to Identify RNA Binding Sites in Proteins. 4th Annual Rocky Mountain Bioinformatics Conference 12/2/2006, Snowmass, CO

Zaback, P., Sander, JD., Fu, F., Voytas, D., Dobbs, D. Designing C2H2 zinc finger proteins to target specific genomic sites. 4th Annual Rocky Mountain Bioinformatics Conference 12/1/2006, Snowmass, CO

Posters:

Sander, JD. , Zaback, P.,, Fu, F., Townsend, J., Winfrey, R., Wright, D., Honavar, V., Voytas, D., Dobbs, D. (2006) Designing C2H2 zinc finger proteins to target specific sites in genomic DNA. Sixth Annual Join Bioinformatic Symposium Ames,IA July 13-14. Poster Presentation.

Terribilini, M., Sander, JD. , Olson, B., Lee, J-H., Jernigan, R., Honavar, V. and Dobbs, D. (2006) A computational method to identify amino acid residues involved in protein-RNA interactions. Sixth Annual Joint Bioformatics Symposium Ames, IA July 13-14 Poster Presentation.

Minion, F. C., T. VanDyk, and JD. Sander. 2006. Screening a Mycoplasma hyopneumoniae Lambda Library Using Hyperimmune and Convalecent Antisera, and Lung Lavage Fluids. 16th Congress of the International Organization for Mycoplasmology, Cambridge, UK, July 9-14. Poster Presentation

Sander, JD. , Zaback, P., Fu, F., Voytas, D., Dobbs, D. (2006) Designing C2H2 zinc finger proteins to target specific genomic sites. Intelligent Systems in Molecular Biology (ISMB 2006), Fortaleza, Brazil. Poster Presentation.

Terribilini, M., Sander, JD. , Olson, B., Lee, J-H., Jernigan, R., Honavar, V. and Dobbs, D. (2006) A computational method to identify amino acid residues involved in protein-RNA interactions. Intelligent Systems in Molecular Biology (ISMB 2006), Fortaleza, Brazil. Poster Presentation.

Sander, JD. , Terriblini, M., Fu, F., Townsend, J., Winfrey, R., Wright, D., Honavar, V., Voytas, D., Dobbs, D. (2006) Designing C2H2 zinc finger proteins to target specific sites in genomic DNA. Pacific Symposium on Biocomputing (PSB 2006), Honolulu, Hawaii. Poster Presentation.

Sander, JD. , Fu, F., Townsend, J., Winfrey, R., Wright, D., Honavar, V., Voytas, D., Dobbs, D. (2005) Designing C2H2 zinc finger proteins to target specific sites in genomic DNA. Growth Factor and Signal Transduction, Ames, Iowa Poster Presentation