Citations

If you use ZiFiT Please Reference:

Sander, J.D., Zaback, P.Z., Joung, J.K., Voytas, D.F., Dobbs, D. (2007) Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool. Nucleic Acids Research, 35,W599-605; doi: 10.1093/nar/gkm349

Engineering by modular design and OPEN:

Sander, JD.*, Zaback, P.*, Joung, JK., Voytas, DF., Dobbs, D. (2009) An affinity-based scoring scheme for predicting DNA-binding activity of modularly assembled zinc-finger proteins. Nucleic Acids Research, 37(2), 506-515

Maeder, ML., Thibodeau-Beganny, S., Osiak, A., Wright, DA., Anthony, RM., Eichtinger,M., Jiang, T., Foley, JE., Winfrey, RJ., Townsend, JA., Unger-Wallace, E., Sander, JD., Muller-Lerch, F., Fu, F., Pearlberg, j., Gobel, C., Dassie, JP., Pruett-Miller, SM., Porteus, MH., Sgroi, DC., Iafrate, JA., Dobbs, D., McCray, PB. Jr, Cathomen, T., Voytas, DF., Joung, JK. (2008) Rapid “open-source” engineering of custom zinc-finger nucleases for highly efficient gene modification Molecular Cell 31, 294-301

Ramirez, C.L., Foley, J.E., Wright, D.A., Müller-Lerch, F., Rahman, S.H., Cornu, T.I., Winfrey, R.J., Sander, J.D., Fu, F., Townsend, J.A., Cathomen, T., Voytas, D.F., Joung, J.K. (2008) Unexpected failure rates for modular assembly of engineered zinc-fngers. Nature Methods, 5:374

Wright, D.A., Thibodeau-Beganny, S., Sander, J.D., Winfrey, R.J., Hirsh, A.S., Eichtinger, M., Fu, F., Porteus, M.H., Dobbs, D., Voytas, D.F., Joung, J.K. (2006) Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly. Nat Protoc, 1, 1637-1652.

Dreier, B., Fuller, R.P., Segal, D.J., Lund, C.V., Blancafort, P., Huber, A., Koksch, B. and Barbas, C.F., 3rd. (2005) Development of zinc finger domains for recognition of the 5'-CNN-3' family DNA sequences and their use in the construction of artificial transcription factors. J Biol Chem, 280, 35588-35597.

Bae, K.H., Kwon, Y.D., Shin, H.C., Hwang, M.S., Ryu, E.H., Park, K.S., Yang, H.Y., Lee, D.K., Lee, Y., Park, J. et al. (2003) Human zinc fingers as building blocks in the construction of artificial transcription factors. Nat Biotechnol, 21, 275-280.

Liu, Q., Xia, Z., Zhong, X. and Case, C.C. (2002) Validated zinc finger protein designs for all 16 GNN DNA triplet targets. J Biol Chem, 277, 3850-3856.

Dreier, B., Beerli, R.R., Segal, D.J., Flippin, J.D. and Barbas, C.F., 3rd. (2001) Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors. J Biol Chem, 276, 29466-29478.

Segal, D.J., Dreier, B., Beerli, R.R. and Barbas, C.F., 3rd. (1999) Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences. Proc Natl Acad Sci U S A, 96, 2758-2763.